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Mac
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Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. Jmol is cross-platform, running on Linux/Unix, Mac OS X, and Windows systems.
· The JmolApplet is a web browser applet that can be integrated into web pages.
· The Jmol application is a standalone Java application that runs on the desktop.
· The JmolViewer is a development tool kit that can be integrated into other Java applications.
Software features of "Jmol":
· Free, open-source software licensed under the GNU Lesser General Public License
· Applet, Application, and Systems Integration Component
· Cross-platform
· Supports all major web browsers
· High-performance 3D rendering with no hardware requirements
· File formats
· Animations
· Vibrations
· basic unit-cell support
· schematic shapes for secondary structures
· measurements
· RasMol/Chime scripting language support
· JavaScript support library
· Exports to .jpg, .pdf, and PovRay
Jmol v10 is a complete rearchitecture and rewrite of Jmol, undertaken in the Spring of 2003, with the specific goal of developing Jmol into a replacement for the Chime Plug-in.
Jmol v10 retains most of the features and functionality of the previous Jmol releases while offering significant enhancments in the following areas:
· true 3D graphics engine that requires no special hardware
· 24 bit color with accurate lighting and shading
· substantially higher rendering performance
· handles large macromolecules with excellent performance
· protein/nucleic acid secondary structure graphics
· RasMol/Chime script compatibility
What's New in 11.5.27 Development Release:
· bug fix: data CLEAR command nonfunctional
· bug fix: "....".trim("xyz") function not properly trimming ANY x,y,z
· bug fix: draw OFFSET not working properly
· bug fix: PovRAY output of draw objects -- cylinder end caps not considered
· bug fix: draw width 0.05 {...} {...} -- line does not properly render
· bug fix: data "model"...end "model" saves state without first line if first line is empty
· bug fix: "show data types" putting comma in wrong location
· new feature: DATA "data2d_xxxxx"..... end "data2d_xxxxx"
· new feature: isosurface FunctionXY "data2d_xxxxx" {origin} {ni x 0 0} {nj 0 y 0} {nk 0 0 z} allows setting isosurface Z values using a block of data (ni rows by nj columns)
· new feature: isosurface FunctionXY "data2d_xyz_xxxx" {origin} {ni x 0 0} {nj 0 y 0} {nk 0 0 z allows setting isosurface values using a block of x y z data, all points for which should be on the surface.
· new feature: GamessUK reader
· new feature: reset VARIABLES (replaces "reset ALL")
What's New in 11.4.0 Stable Release:
· bug fix: atomChooser not updated for zap
· bug fix: isosurface model keyword does not carry on to saved state
· bug fix: lcaocartoons do not color properly or get restored from state properly
· bug fix: popup menu selection of groups and symmetry operations does not work
· menu: internationalization of "Monomer" and "Shapely"
· bug fix: mol2 reader cannot read files with single-line comments
| Publisher | Egon Willighagen and Michael Howard |
|---|---|
| Downloads | 2 |
| Date Added | 21st April, 2008 |
| Report | Send us a report |
| Reviews | Review Jmol 11.4.0 / 11.5.27 now |
| Rate this file |
